-
Rectal Cancer (MSK,Nature Medicine 2019): MSK-IMPACT targeted sequencing of matched rectal cancer tumor and tumoroid samples
- Authors
- Ganesh, KarunaWu, ChaoO'Rourke, Kevin PatrickSzeglin, Bryan Charles46 more author(s)...
- Description
This dataset contains summary data visualizations and clinical data of rectal cancer tumoroids based on massively parallel sequencing using the custom, Food and Drug Administration (FDA)-cleared tumor-profiling panel MSK Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT). The clinical data includes mutation count, information about mutated genes, Gene Panel, Impact TMB Score,...
- Subject
-
DNA Mutational AnalysisRectal NeoplasmsRectal Neoplasms/genetics
- Access Rights
- Free to All
-
Colorectal Adenocarcinoma (TCGA, PanCancer Atlas) data
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 594 colorectal adenocarcinomas from 594 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information...
- Subject
-
Adenocarcinoma, MucinousColonic NeoplasmsColorectal NeoplasmsDNA Mutational AnalysisRectal Neoplasms
- Access Rights
- Free to All
-
MSK-IMPACT Clinical Sequencing Cohort (MSKCC, Nat Med 2017): Targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay
- Description
This dataset contains summary data visualizations and clinical data from the targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay. The clinical data includes mutation count, information about mutated genes, tumor mutational burden calculations, tissue site from which the sample was derived, tumor purity among other relevant data points. The data set also includes copy-number segment...
- Subject
-
AdenocarcinomaAdenocarcinoma of LungAdenocarcinoma, MucinousBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, HepatocellularCarcinoma, LobularCarcinoma, Non-Small-Cell LungCarcinoma, Renal CellCarcinoma, Squamous CellCarcinosarcomaCholangiocarcinomaColonic NeoplasmsColorectal NeoplasmsCystadenocarcinoma, SerousDNA Mutational AnalysisGallbladder NeoplasmsGlioblastomaLiposarcomaLung NeoplasmsLymphoma, FollicularMelanomaMesotheliomaNeoplasms, Squamous CellNeurofibromaOligodendrogliomaOsteosarcomaOvarian NeoplasmsPancreatic NeoplasmsProstatic NeoplasmsRectal NeoplasmsSarcomaSarcoma, SynovialSquamous Cell Carcinoma of Head and NeckStomach NeoplasmsThyroid Cancer, PapillaryUrinary Bladder NeoplasmsUterine NeoplasmsUveal Neoplasms
- Access Rights
- Free to All
-
The Angiosarcoma Project - Count Me In (Nature Medicine, 2020)
- Description
Dataset Summary Description: "The Angiosarcoma Project is an ongoing patient-driven initiative. This archived Angiosarcoma Project dataset was analyzed in the linked Nature Medicine 2020 manuscript, and is derived from 48 samples from 36 angiosarcoma patients. Angiosarcoma tumor specimens (FFPE) were subjected to whole-exome sequencing (along with matched germline whole-exome sequencing). In addition...
- Subject
-
AdenocarcinomaBasal Cell CarcinomaBreast NeoplasmsHemangiosarcomaHodgkin DiseaseLeukemia, Lymphocytic, Chronic, B-CellRectal NeoplasmsSkin NeoplasmsThyroid NeoplasmsUterine NeoplasmsVulvar Neoplasms
- Access Rights
- Free to All
-
The Angiosarcoma Project (Provisional): an ongoing patient-driven initiative.
- Description
Dataset Summary Description: "This provisional dataset is currently derived from 83 samples, including tumor specimens (FFPE and cfDNA) from 62 angiosarcoma patients subjected to WES (along with matched germline WES). This study includes genomic data, patient-reported data (pre-pended as PRD), medical record data (MedR), and pathology report data (PATH). As these data were generated in a research...
- Subject
-
Basal Cell CarcinomaBreast NeoplasmsColorectal NeoplasmsHemangiosarcomaHodgkin DiseaseLeukemia, Lymphocytic, Chronic, B-CellProstatic NeoplasmsRectal NeoplasmsSkin NeoplasmsThyroid NeoplasmsUterine NeoplasmsVulvar Neoplasms
- Access Rights
- Free to All