This dataset contains summary data visualizations and clinical data from a broad sampling of 36 cholangiocarcinomas from 36 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information about mutated...

This dataset contains summary data visualizations and clinical data from the targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay. The clinical data includes mutation count, information about mutated genes, tumor mutational burden calculations, tissue site from which the sample was derived, tumor purity among other relevant data points. The data set also includes copy-number segment...

This dataset contains summary data visualizations and clinical data from a broad sampling of 195 cholangiocarcinomas from 192 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, patient demographics, and disease status....

From GEO Summary: The impact of different carcinogenic exposures on the specific patterns of somatic mutations in human tumors remains unclear. To clarify this issue, we profiled 209 cholangiocarcinomas (CCAs) from Asia and Europe, including 108 cases caused by liver fluke Opisthorchis viverrini (OV)-infection and 101 cases due to non-OV etiologies. Whole-exome (N = 15) and prevalence screening (N...

This dataset contains summary data visualizations and clinical data from a sampling of 15 cholangiocarcinomas from 15 patients. gathered for a study by the National Cancer Centre of Singapore. The clinical data includes de-identified patient and tumor sample ID, mutation count, patient demographics, anatomical subtype, and anti_O_viverrini_IgG. The clinical data can be downloaded as a .tsv file.

Whole Exome Sequencing of 16 non-liver fluke (OV) associated cholangiocarcinomas. Study conducted by Duke NUS Medical School in Singapore containg 471 sequence runs.

TCGA Cholangiocarcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 51 cholangiocarcinomas from 51 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...

From GEO summary: The impact of different carcinogenic exposures on the specific patterns of somatic mutations in human tumors remains unclear. To clarify this issue, we profiled 209 cholangiocarcinomas (CCAs) from Asia and Europe, including 108 cases caused by liver fluke Opisthorchis viverrini (OV)-infection and 101 cases due to non-OV etiologies. Whole-exome (N = 15) and prevalence screening (N...

Exome Sequencing for Opisthorchis viverrini-related cholangiocarcinoma in 8 O.viverrini-related tumors and matched normal tissue. This dataset contains summary data visualizations and clinical data from a sampling of cholangiocarcinomas gathered for a study by the National University of Singapore. The clinical data includes de-identified patient and tumor information, Histological Type, mutation count,...

This dataset contains summary data visualizations and clinical data from a broad sampling of 412 intrahepatic cholangiocarcinomas from 412 patients. The clinical data includes mutation count, information about mutated genes, patient demographics, adjuvant chemotherapy, patient BMI, Duct Type, DZ Extent, CA19, CA19 High, and presence of chronic viral hepatitis, cirrhosis, diabetes, ECOG BIN, HAIC,...