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Results Found: 11
  • Cholangiocarcinoma (TCGA, PanCancer Atlas) data

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 36 cholangiocarcinomas from 36 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information about mutated...

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Access Rights
    Free to All
  • MSK-IMPACT Clinical Sequencing Cohort (MSKCC, Nat Med 2017): Targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay

    Description

    This dataset contains summary data visualizations and clinical data from the targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay. The clinical data includes mutation count, information about mutated genes, tumor mutational burden calculations, tissue site from which the sample was derived, tumor purity among other relevant data points. The data set also includes copy-number segment...

    Subject
    Adenocarcinoma
    Adenocarcinoma of Lung
    Adenocarcinoma, Mucinous
    Breast Neoplasms
    Carcinoma, Ductal, Breast
    Carcinoma, Hepatocellular
    Carcinoma, Lobular
    Carcinoma, Non-Small-Cell Lung
    Carcinoma, Renal Cell
    Carcinoma, Squamous Cell
    Carcinosarcoma
    Cholangiocarcinoma
    Colonic Neoplasms
    Colorectal Neoplasms
    Cystadenocarcinoma, Serous
    DNA Mutational Analysis
    Gallbladder Neoplasms
    Glioblastoma
    Liposarcoma
    Lung Neoplasms
    Lymphoma, Follicular
    Melanoma
    Mesothelioma
    Neoplasms, Squamous Cell
    Neurofibroma
    Oligodendroglioma
    Osteosarcoma
    Ovarian Neoplasms
    Pancreatic Neoplasms
    Prostatic Neoplasms
    Rectal Neoplasms
    Sarcoma
    Sarcoma, Synovial
    Squamous Cell Carcinoma of Head and Neck
    Stomach Neoplasms
    Thyroid Cancer, Papillary
    Urinary Bladder Neoplasms
    Uterine Neoplasms
    Uveal Neoplasms
    Access Rights
    Free to All
  • Cholangiocarcinoma (MSK, Clin Cancer Res 2018): Targeted sequencing (MSK-IMPACT) of 195 tumor samples (194 with matched normals) from 192 cholangiocarcinoma patients.

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 195 cholangiocarcinomas from 192 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, patient demographics, and disease status....

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Access Rights
    Free to All
  • Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013): Exome sequencing of 15 cholangiocarcinoma cases.

    Description

    This dataset contains summary data visualizations and clinical data from a sampling of 15 cholangiocarcinomas from 15 patients. gathered for a study by the National Cancer Centre of Singapore. The clinical data includes de-identified patient and tumor sample ID, mutation count, patient demographics, anatomical subtype, and anti_O_viverrini_IgG. The clinical data can be downloaded as a .tsv file.

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Access Rights
    Free to All
  • Cholangiocarcinoma (TCGA, Firehose Legacy)

    Description

    TCGA Cholangiocarcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 51 cholangiocarcinomas from 51 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Access Rights
    Free to All
  • Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing (Genome variation profiling by SNP array)

    Authors
    Chan-On, Waraporn
    Cutcutache, Ioana
    Teh, Bin Tean
    Description

    From GEO summary: The impact of different carcinogenic exposures on the specific patterns of somatic mutations in human tumors remains unclear. To clarify this issue, we profiled 209 cholangiocarcinomas (CCAs) from Asia and Europe, including 108 cases caused by liver fluke Opisthorchis viverrini (OV)-infection and 101 cases due to non-OV etiologies. Whole-exome (N = 15) and prevalence screening (N...

    Subject
    Bile Duct Neoplasms
    Cholangiocarcinoma
    Gallbladder Neoplasms
    Access Rights
    Free to All
  • Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing (methylation profiling array)

    Authors
    Chan-On, Waraporn
    Lim, Weng Khong
    Teh, Bin Tean
    Description

    From GEO Summary: The impact of different carcinogenic exposures on the specific patterns of somatic mutations in human tumors remains unclear. To clarify this issue, we profiled 209 cholangiocarcinomas (CCAs) from Asia and Europe, including 108 cases caused by liver fluke Opisthorchis viverrini (OV)-infection and 101 cases due to non-OV etiologies. Whole-exome (N = 15) and prevalence screening (N...

    Subject
    Bile Duct Neoplasms
    Cholangiocarcinoma
    DNA Methylation
    Gallbladder Neoplasms
    Access Rights
    Free to All
  • Cholangiocarcinoma (National University of Singapore, Nat Genet 2012)

    Description

    Exome Sequencing for Opisthorchis viverrini-related cholangiocarcinoma in 8 O.viverrini-related tumors and matched normal tissue. This dataset contains summary data visualizations and clinical data from a sampling of cholangiocarcinomas gathered for a study by the National University of Singapore. The clinical data includes de-identified patient and tumor information, Histological Type, mutation count,...

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Access Rights
    Free to All
  • Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing

    Description

    Whole Exome Sequencing of 16 non-liver fluke (OV) associated cholangiocarcinomas. Study conducted by Duke NUS Medical School in Singapore containg 471 sequence runs.

    Subject
    Bile Duct Neoplasms
    Cholangiocarcinoma
    Gallbladder Neoplasms
    Access Rights
    Free to All
  • Intrahepatic Cholangiocarcinoma (MSK, Hepatology 2021): Targeted sequencing of 412 intrahepatic cholangiocarcinoma tumor/normal sample pairs.

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 412 intrahepatic cholangiocarcinomas from 412 patients. The clinical data includes mutation count, information about mutated genes, patient demographics, adjuvant chemotherapy, patient BMI, Duct Type, DZ Extent, CA19, CA19 High, and presence of chronic viral hepatitis, cirrhosis, diabetes, ECOG BIN, HAIC,...

    Subject
    Cholangiocarcinoma
    DNA Mutational Analysis
    Liver Neoplasms
    Access Rights
    Free to All