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Results Found: 8
  • Sarcoma (TCGA, PanCancer Atlas)

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 255 sarcomas from 255 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information about mutated genes,...

    Subject
    DNA Mutational Analysis
    Fibromatosis, Aggressive
    Fibrosarcoma
    Histiocytoma, Malignant Fibrous
    Leiomyosarcoma
    Liposarcoma
    Nerve Sheath Neoplasms
    Neurofibroma
    Sarcoma
    Sarcoma, Synovial
    Access Rights
    Free to All
  • MSK-IMPACT Clinical Sequencing Cohort (MSKCC, Nat Med 2017): Targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay

    Description

    This dataset contains summary data visualizations and clinical data from the targeted sequencing of 10,000 clinical cases using the MSK-IMPACT assay. The clinical data includes mutation count, information about mutated genes, tumor mutational burden calculations, tissue site from which the sample was derived, tumor purity among other relevant data points. The data set also includes copy-number segment...

    Subject
    Adenocarcinoma
    Adenocarcinoma of Lung
    Adenocarcinoma, Mucinous
    Breast Neoplasms
    Carcinoma, Ductal, Breast
    Carcinoma, Hepatocellular
    Carcinoma, Lobular
    Carcinoma, Non-Small-Cell Lung
    Carcinoma, Renal Cell
    Carcinoma, Squamous Cell
    Carcinosarcoma
    Cholangiocarcinoma
    Colonic Neoplasms
    Colorectal Neoplasms
    Cystadenocarcinoma, Serous
    DNA Mutational Analysis
    Gallbladder Neoplasms
    Glioblastoma
    Liposarcoma
    Lung Neoplasms
    Lymphoma, Follicular
    Melanoma
    Mesothelioma
    Neoplasms, Squamous Cell
    Neurofibroma
    Oligodendroglioma
    Osteosarcoma
    Ovarian Neoplasms
    Pancreatic Neoplasms
    Prostatic Neoplasms
    Rectal Neoplasms
    Sarcoma
    Sarcoma, Synovial
    Squamous Cell Carcinoma of Head and Neck
    Stomach Neoplasms
    Thyroid Cancer, Papillary
    Urinary Bladder Neoplasms
    Uterine Neoplasms
    Uveal Neoplasms
    Access Rights
    Free to All
  • SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...

    Subject
    Breast Neoplasms
    Carcinoma, Hepatocellular
    Carcinoma, Non-Small-Cell Lung
    Carcinoma, Renal Cell
    Colorectal Neoplasms
    DNA Mutational Analysis
    Endometrial Neoplasms
    Esophageal Neoplasms
    Genes, erbB
    Genes, erbB-2
    Melanoma
    Ovarian Neoplasms
    Pancreatic Neoplasms
    Salivary Gland Neoplasms
    Sarcoma
    Skin Neoplasms
    Urinary Bladder Neoplasms
    Uterine Cervical Neoplasms
    Access Rights
    Free to All
  • Sarcoma (TCGA, Firehose Legacy)

    Description

    TCGA Sarcoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 200 carcinomas from 200 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information about mutated...

    Subject
    DNA Mutational Analysis
    Fibromatosis, Aggressive
    Fibrosarcoma
    Histiocytoma, Malignant Fibrous
    Leiomyosarcoma
    Liposarcoma
    Nerve Sheath Neoplasms
    Neurofibroma
    Sarcoma
    Sarcoma, Synovial
    Access Rights
    Free to All
  • Uterine Sarcoma/Mesenchymal: Targeted Sequencing of 108 Uterine Sarcoma/Mesenchymal tumor/normal pairs from 107 patients

    Description

    This dataset contains the summary data visualizations and clinical data from targeted sequencing of 108 Uterine Sarcoma/Mesenchymal tumor normal pairs from 107 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Primary/Metastasis Sample Type, Cancer Type - Detailed Code, Current Cancer Stage, Gene Panel, Impact TMB Score, Initial...

    Subject
    Adenosarcoma
    Leiomyosarcoma
    Sarcoma
    Sarcoma, Endometrial Stromal
    Smooth Muscle Tumor
    Uterine Cervical Neoplasms
    Uterine Neoplasms
    Access Rights
    Free to All
  • Adult Soft Tissue Sarcomas (TCGA, Cell 2017): Whole-exome sequencing of 206 Adult Soft Tissue Sarcoma tumor/normal pairs.

    Description

    This dataset contains the summary data visualizations and clinical data from Whole-exome sequencing of 206 Adult Soft Tissue Sarcoma tumor/normal pairs. from 206 patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Demographic Information, Adjuvant Postoperative Pharmaceutical Therapy Administered Indicator, AMP 12q15 CDK4, AMP 12q15 DDIT3, AMP 12q15 FRS2, AMP 12q15...

    Subject
    Histiocytoma, Malignant Fibrous
    Leiomyosarcoma
    Liposarcoma
    Lymphoma, Non-Hodgkin
    Neurofibrosarcoma
    Sarcoma
    Sarcoma, Synovial
    Access Rights
    Free to All
  • Sarcoma: Sanger-sequenced 226 protein-coding genes (3,849 exons and adjacent intronic) on 207 samples (with 205 matched normals) encompassing 7 major sarcoma subtypes.

    Description

    This dataset contains the summary data visualizations and clinical data from Sanger-sequenced 226 protein-coding genes (3,849 exons and adjacent intronic) on 207 patients and samples (with 205 matched normals) encompassing 7 major sarcoma subtypes. Clinical data includes: Mutation Count, Fraction Genome Altered and Somatic Status. The plaintext components of the dataset can be downloaded as a tar...

    Subject
    Sarcoma
    Access Rights
    Free to All
  • Sarcoma Classification by DNA-methylation profiling

    Authors
    Schrimpf, Daniel
    Description

    Summary and Overall design from the GEO: "DNA methylation classification reference set (1077) and validation set (428) of 1505 sarcoma samples using Illumina HumanMethylation450 BeadChips or Illumina Infinium HumanMethylation850 BeadChips" This data set is used to support the classification of soft tissue and bone tumors using a machine learning classifier algorithm based on array-generated DNA methylation...

    Subject
    Bone Neoplasms
    Neoplasms, Connective and Soft Tissue
    Sarcoma
    Access Rights
    Free to All