Adult Soft Tissue Sarcomas (TCGA, Cell 2017): Whole-exome sequencing of 206 Adult Soft Tissue Sarcoma tumor/normal pairs.
UID: 10565
Publisher(s): The Cancer Genome Atlas (TCGA)- Description
- This dataset contains the summary data visualizations and clinical data from Whole-exome sequencing of 206 Adult Soft Tissue Sarcoma tumor/normal pairs. from 206 patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Demographic Information, Adjuvant Postoperative Pharmaceutical Therapy Administered Indicator, AMP 12q15 CDK4, AMP 12q15 DDIT3, AMP 12q15 FRS2, AMP 12q15 HMGA2, AMP 12q15 MDM2, avg CN 12q13~15, Cancer DNA Fraction, CN Cluster and whether the patient started adjuvant postoperative radiotherapy?. The plaintext components of the dataset can be downloaded as a tar file. The clinical data can be downloaded as a tsv file. The dataset includes Next-Generation Clustered Heat Maps (NG-CHM) viewable via an embedded NG-CHM Heat Map Viewer, provided my MD Anderson Cancer Center, which provides a graphical environment for exploration of clustered or non-clustered heat map data. The data set also includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
Leiomyosarcoma
Undifferentiated Pleomorphic Sarcoma/Malignant Fibrous Histiocytoma/High-Grade Spindle Cell Sarcoma
Myxofibrosarcoma
Malignant Peripheral Nerve Sheath Tumor
Synovial Sarcoma
Uterine Leiomyosarcoma
- Access Restrictions
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Free to All
- Access Instructions
- This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal. Downloaded SEG files (tab-delimited segmented data text files that list loci and associated numeric values) can be viewed by downloading and installing the Integrative Genomics Viewer desktop application.
- Associated Publications
- Data Type
- Software Used
- Dataset Format(s)
- TSV, TAR, SEG
- Dataset Size
- 38.2 MB (TAR), 89 KB (TSV), 3.9MB (SEG)
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