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Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 442 samples of skin cutaneous melanomas from 488 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information...
- Subject
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DNA Mutational AnalysisMelanomaSkin Neoplasms
- Access Rights
- Free to All
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SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...
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Breast NeoplasmsCarcinoma, HepatocellularCarcinoma, Non-Small-Cell LungCarcinoma, Renal CellColorectal NeoplasmsDNA Mutational AnalysisEndometrial NeoplasmsEsophageal NeoplasmsGenes, erbBGenes, erbB-2MelanomaOvarian NeoplasmsPancreatic NeoplasmsSalivary Gland NeoplasmsSarcomaSkin NeoplasmsUrinary Bladder NeoplasmsUterine Cervical Neoplasms
- Access Rights
- Free to All
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TMB and Immunotherapy (MSKCC, Nat Genet 2019): Genomic and survival data from 1661 tumor-normal pairs from 1661 patients with various cancer types sequenced with the MSK-IMPACT assay.
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 1,661 samples of across multiple cancer types showing tumor mutational load and survival following immunotherapy from 1,661 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK),...
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DNA Mutational AnalysisImmunotherapyMutationTumor Burden
- Access Rights
- Free to All
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Tumors with TRK fusions (MSK, 2019): Tumors with TRK fusions based on MSK-IMPACT targeted sequencing.
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of tropomyosin receptor kinase (TRK) fusion tumors. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), information about mutated genes, patient demographics, and modality. The data set also...
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DNA Mutational AnalysisOncogene Proteins, FusionReceptor Protein-Tyrosine KinasesReceptor, trkAReceptor, trkBReceptor, trkC
- Access Rights
- Free to All
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Skin Cutaneous Melanoma (TCGA, Firehose Legacy)
- Description
TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 480 carcinomas from 471 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...
- Subject
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DNA Mutational AnalysisMelanomaSkin Neoplasms
- Access Rights
- Free to All
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Melanoma (MSKCC, 2018): MSK-IMPACT sequencing of 720 Melanoma tumor samples with matched normals.
- Description
This dataset contains the summary data visualizations and clinical data of 696 samples of MSK-IMPACT sequencing of Melanoma tumors with matched normals from 696 patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Primary/Metastasis Sample Type, Demographic Information, AJCC 7th & AJCC 8th Staging, Bone Status, CNS Status, DMT Primary Site, Driver Class, ECOG, LDH,...
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MelanomaSkin Neoplasms
- Access Rights
- Free to All
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Mixed cfDNA (MSKCC, 2020): IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal
- Description
This dataset contains the summary data visualizations and clinical data of IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal from 118 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Sex, Primary/Metastasis Sample Type, Collaboration Id, Gene Panel, Oncotree Code, Tumor/cfDNA Sample...
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AdenocarcinomaAdenocarcinoma of LungBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, NeuroendocrineCarcinoma, Renal CellCarcinoma, Squamous CellCell-Free Nucleic AcidsChoriocarcinomaEndodermal Sinus TumorMelanomaNeoplasms, Germ Cell and EmbryonalNeoplasms, Squamous CellNeuroendocrine TumorsProstatic NeoplasmsSeminomaSmall Cell Lung CarcinomaUrinary Bladder Neoplasms
- Access Rights
- Free to All
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Melanoma (MSKCC, NEJM 2014): Whole-exome sequencing of 64 pretreated (ipilimumab or tremelimumab) melanoma tumor-normal pairs
- Description
This dataset contains the summary data visualizations and clinical data of whole-exome sequencing of 64 pretreated melanoma tumor-normal pairs in 64 patients. Clinical data includes:Cancer Type, Mutation Count, Fraction Genome Altered, Age at Diagnosis, Sex, Tumor Site, Biopsy Time, CBSET B cells memory, CBSET B cells naive, CBSET Dendritic cells activated, CBSET Dendritic cells resting, CBSET Eosinophils,...
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Melanoma
- Access Rights
- Free to All
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SU2C Melanoma
- Description
This dataset contains the summary data visualizations and clinical data of 65 samples from 36 Melanoma patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Race, Subtype, Mutation Burden, Purity, BRAF Mutation Status, CKIT Mutation Status, NRAS Mutation Status, Gender, Age, Best response, Administered treatment, Breslow Depth (mm)....
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Melanoma
- Access Rights
- Free to All
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Whole genome sequencing of primary and metastatic Melanoma cases in an Australian cohort
- Description
Study Description from EGA: "Melanoma is the fourth most common cancer in Australia and the leading cause of cancer death in young adults. The Australian Melanoma Genome Project (AMGP) is analysing whole genomes from melanomas. We include the results of whole genome sequencing (WGS) for a number of datasets that include cutaneous, acral and mucosal melanoma subtypes. "
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Conjunctival NeoplasmsMelanomaNevus, PigmentedSkin NeoplasmsUveal Neoplasms
- Access Rights
- Application Required