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Upper Tract Urothelial Cancer (MSK, Eur Urol 2015): Next-generation sequencing (MSK-IMPACT) on all protein-coding exons of 300 cancer associated genes of 85 Upper Tract Urothelial Carcinoma tumor samples and paired normals.
- Description
This dataset contains summary data visualizations and clinical data from a broad of 85 samples of upper tract urothelial carcinoma tumors from 83 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes mutation count, information about mutated genes, patient demographics, disease status, Adjuvant Chemotherapy, American Joint Committee on Cancer...
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DNA Mutational AnalysisKidney NeoplasmsUreteral NeoplasmsUrinary Bladder Neoplasms
- Access Rights
- Free to All
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Upper Tract Urothelial Carcinoma PDX (MSK, 2019): MSK-IMPACT sequencing of 34 upper tract urothelial patients and the matching PDX or PDC generated from 17 patient tumors.
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of upper tract unothelial carcinoma tumors. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, patient demographics, American Joint Committee...
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DNA Mutational AnalysisKidney NeoplasmsUreteral NeoplasmsUrinary Bladder Neoplasms
- Access Rights
- Free to All
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TMB and Immunotherapy (MSKCC, Nat Genet 2019): Genomic and survival data from 1661 tumor-normal pairs from 1661 patients with various cancer types sequenced with the MSK-IMPACT assay.
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 1,661 samples of across multiple cancer types showing tumor mutational load and survival following immunotherapy from 1,661 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK),...
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DNA Mutational AnalysisImmunotherapyMutationTumor Burden
- Access Rights
- Free to All
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Mixed cfDNA (MSKCC, 2020): IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal
- Description
This dataset contains the summary data visualizations and clinical data of IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal from 118 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Sex, Primary/Metastasis Sample Type, Collaboration Id, Gene Panel, Oncotree Code, Tumor/cfDNA Sample...
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AdenocarcinomaAdenocarcinoma of LungBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, NeuroendocrineCarcinoma, Renal CellCarcinoma, Squamous CellCell-Free Nucleic AcidsChoriocarcinomaEndodermal Sinus TumorMelanomaNeoplasms, Germ Cell and EmbryonalNeoplasms, Squamous CellNeuroendocrine TumorsProstatic NeoplasmsSeminomaSmall Cell Lung CarcinomaUrinary Bladder Neoplasms
- Access Rights
- Free to All
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Upper Tract Urothelial Carcinoma (MSK, Nat Commun 2020): Targeted Sequencing of 119 upper tract urothelial carcinoma tumor/normal pairs.
- Description
This dataset contains the summary data visualizations and clinical data from targeted sequencing of 119 upper tract urothelial carcinoma tumor/normal pairs from 119 patients. Clinical data includes: Mutation Count, Fraction Genome Altered, Sex, Race Category, Age At Surgery, AJCC Tumor Stage Code, Neoplasm Histologic Grade. The plaintext components of the dataset can be downloaded as a tar file. The...
- Subject
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Kidney NeoplasmsUreteral NeoplasmsUrinary Bladder Neoplasms
- Access Rights
- Free to All