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  • Squamous Cell Carcinoma of the Vulva: Whole exome sequencing of tumor/normal pairs from 15 vulvar squamous cell carcinomas

    Description

    This dataset contains the summary data visualizations and clinical data from Whole exome sequencing of tumor/normal pairs from 15 vulvar squamous cell carcinomas from 15 patients. Clinical data includes: Mutation Count, Diagnosis Age, HPV Status, Invasion Depth (mm), Meat Target Coverage Normal, Mean Target Coverage Tumor, Sample Collection Source and Tumor Size. The plaintext components of the dataset...

    Subject
    Carcinoma, Squamous Cell
    DNA Mutational Analysis
    Vulvar Neoplasms
    Access Rights
    Free to All
  • The Angiosarcoma Project - Count Me In (Nature Medicine, 2020)

    Description

    Dataset Summary Description: "The Angiosarcoma Project is an ongoing patient-driven initiative. This archived Angiosarcoma Project dataset was analyzed in the linked Nature Medicine 2020 manuscript, and is derived from 48 samples from 36 angiosarcoma patients. Angiosarcoma tumor specimens (FFPE) were subjected to whole-exome sequencing (along with matched germline whole-exome sequencing). In addition...

    Subject
    Adenocarcinoma
    Basal Cell Carcinoma
    Breast Neoplasms
    Hemangiosarcoma
    Hodgkin Disease
    Leukemia, Lymphocytic, Chronic, B-Cell
    Rectal Neoplasms
    Skin Neoplasms
    Thyroid Neoplasms
    Uterine Neoplasms
    Vulvar Neoplasms
    Access Rights
    Free to All
  • The Angiosarcoma Project (Provisional): an ongoing patient-driven initiative.

    Description

    Dataset Summary Description: "This provisional dataset is currently derived from 83 samples, including tumor specimens (FFPE and cfDNA) from 62 angiosarcoma patients subjected to WES (along with matched germline WES). This study includes genomic data, patient-reported data (pre-pended as PRD), medical record data (MedR), and pathology report data (PATH). As these data were generated in a research...

    Subject
    Basal Cell Carcinoma
    Breast Neoplasms
    Colorectal Neoplasms
    Hemangiosarcoma
    Hodgkin Disease
    Leukemia, Lymphocytic, Chronic, B-Cell
    Prostatic Neoplasms
    Rectal Neoplasms
    Skin Neoplasms
    Thyroid Neoplasms
    Uterine Neoplasms
    Vulvar Neoplasms
    Access Rights
    Free to All
  • Illumina sequencing of vaginal epithelial cells from women using depot medroxyprogesterone acetate or non-hormonal contraception

    Authors
    Katherine, Mackenzie
    Hel, Zdenek
    Description

    Summary from the GEO: "The use of the hormonal contraceptive DMPA has been associated with a moderate increase in sexually transmitted infections, including HIV-1. To better understand the biological mechanisms behind this phenomenon, we report here the use of mRNA-sequencing on the Illumina HiSeq2000 of vaginal epithelial cells from women using DMPA or controls. We found that women using DMPA demonstrate...

    Subject
    Data Mining
    Sequence Analysis, RNA
    Access Rights
    Free to All