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Gene expression analysis of primary mouse prostate organoid culture with overexpression of FOXA1
- Authors
- Adams, ElizabethSawyers, Charles L.Leslie, Christina
- Description
Summary from the GEO: "Gene expression analysis of primary mouse prostate organoid culture with overexpression of FOXA1 Examination by genotypes and days elapsed prepared in 3 replicates." The study associated with the dataset further explains FOXA1 and how it connects to the dataset: "Mutations in the transcription factor FOXA1 define a unique subset of prostate cancers but the functional consequences...
- Subject
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ChromatinMutationProstatic Neoplasms
- Access Rights
- Free to All
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Genomic analyses of primary mouse prostate organoid culture with overexpression of FOXA1
- Authors
- Adams, ElizabethSawyers, Charles L.Leslie, Christina
- Description
Summary from the GEO: "Mutations in the FOXA1 transcription factor define a unique subset of prostate cancers but the functional consequences of these mutations and whether they confer gain or loss of function is unknown. By annotating the FOXA1 mutation landscape from 3086 human prostate cancers, we define two hotspots in the forkhead domain: Wing2 (~50% of all mutations) and R219 (~5%), a highly...
- Subject
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ChromatinMutationProstatic Neoplasms
- Access Rights
- Free to All
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Chromatin Landscape Analysis of primary mouse prostate organoid culture with overexpression of FOXA1
- Authors
- Adams, ElizabethSawyers, Charles L.Leslie, Christina
- Description
Summary from the GEO: "Chromatin Landscape Analysis of primary mouse prostate organoid culture with overexpression of FOXA1. Examination by genotypes and days elapsed prepared in 3 replicates." This dataset depicts mutations in the FOXA1 gene, which define a unique subset of prostate cancers.
- Subject
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ChromatinMutationProstatic Neoplasms
- Access Rights
- Free to All
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Inhibition of MYC by the SMARCB1 tumor suppressor
- Authors
- Tansey, WilliamWeissmiller, AprilLiu, QiWang, Jing
- Description
Summary from the GEO: "We report that the protein encoded by the SMARCB1 gene, SNF5, is capable of inhibiting MYC binding in vitro and in a malignant rhabdoid tumor (MRT) cell line. By comparing the effects of reintroduction of SNF5 with genetic inhibition of MYC (OMOMYC) on multiple aspects of chromatin remodeling and transcription in MRT cells, we show that regulation of MYC binding by SNF5 is not...
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ChromatinChromatin Assembly and DisassemblyProto-Oncogene Proteins c-mycRhabdoid TumorSMARCB1 Protein
- Access Rights
- Free to All
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DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. (Hammond et al. 2021)
- Authors
- Hammond, Colin M.Bao, HongyuHuang, HongdaGroth, Anja
- Description
Raw data for Western blots, gel-based assays and ITC as a pdf. These images are correlated with the experiments and descriptions of the associated publication. Overall, research for the publication demonstrated that "DNAJC9 integrates ATP-resourced protein folding into the histone supply pathway to resolve aberrant intermediates throughout the dynamic lives of histones."
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ChromatinHistone ChaperonesHistonesHSP40 Heat-Shock Proteins
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- Free to All
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Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [ChIP-seq]
- Authors
- Sun, ZhenHelin, Kristian
- Description
Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...
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ChromatinChromatin Immunoprecipitation SequencingHistone-Lysine N-MethyltransferaseNuclear ProteinsSotos Syndrome
- Access Rights
- Free to All
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Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [CUT&RUN]
- Authors
- Sun, ZhenHelin, Kristian
- Description
Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...
- Subject
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ChromatinHistone-Lysine N-MethyltransferaseNuclear ProteinsSotos Syndrome
- Access Rights
- Free to All
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Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [ATAC-seq]
- Authors
- Sun, ZhenHelin, Kristian
- Description
Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including Sotos syndrome. Despite impacts of H3K36me2 on H3K27me3 and DNA methylation, a direct role of NSD1 in transcriptional regulation remains largely unknown. Here, we show that NSD1 and H3K36me2...
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ChromatinChromatin Immunoprecipitation SequencingHistone-Lysine N-MethyltransferaseNuclear ProteinsSotos Syndrome
- Access Rights
- Free to All
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Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [SLAM-seq]
- Authors
- Sun, ZhenHelin, Kristian
- Description
Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...
- Subject
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ChromatinHistone-Lysine N-MethyltransferaseNuclear ProteinsSequence Analysis, RNASotos Syndrome
- Access Rights
- Free to All
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Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [RNA-seq]
- Authors
- Sun, ZhenHelin, Kristian
- Description
Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including Sotos syndrome. Despite impacts of H3K36me2 on H3K27me3 and DNA methylation, a direct role of NSD1 in transcriptional regulation remains largely unknown. Here, we show that NSD1 and H3K36me2...
- Subject
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ChromatinHistone-Lysine N-MethyltransferaseNuclear ProteinsRNA-SeqSotos Syndrome
- Access Rights
- Free to All