This dataset carries out simulation studies to investigate the impact of misclassification simulation extrapolation method on a Weibull accelerated failure time model. The proposed method is then applied to colon cancer data obtained from the cancer registry at Memorial Sloan Kettering Cancer Center. This dataset provides the simulation results with n=1000 for section 4.2 – section 4.6 in the associated...

Cross-linking mass spectrometry data for integrative structural analyses of the Smc5/6 holo-complex from budding yeast. Electron microscopy, crosslinking mass spectrometry, and computational modeling reveal that while the complex shares an overall organization with other SMC complexes, it possesses several strikingly different features.

Description from Zenodo: "Objective. This work aims to generate realistic anatomical deformations from static patient scans. Specifically, we present a method to generate these deformations/augmentations via deep learning driven respiratory motion simulation that provides the ground truth for validating deformable image registration (DIR) algorithms and driving more accurate deep learning based...

Description from GitHub: "Schrödinger project files, YANK simulation inputs, and analysis scripts from 'Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia'."

Description from GitHub: "This repository contains the code to reproduce the modeling figures of the paper by Saiz et al, published in eLife 2020;9:e56079 (doi: 10.7554/eLife.56079) and posted in bioRxiv (preprint 2019.12.27.889006). It includes the following: fig2b.ipynb: self-contained Jupyter notebook to generate the phase portrait shown in Figure 2b. fig2c.ipynb: Jupyter notebook to generate...

Description from GitHub: "This repository contains the data and code associated with the article by Saiz et al., Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development, eLife 2020;9:e56079, DOI:10.7554/eLife/56079. The repository tries to follow a standard structure, mostly based on the Cookiecutter Data Science project and other...