Description from GitHub: "General purpose mskilab R tools: R miscellaneous utilities for basic data manipulation, debugging, viz, lsf management, and common mskilab tasks."

Description from GitHub: "R package for plotting tracks of 1D and 2D genomic data stored in GenomicRanges, common UCSC formats, ffTrack. Plotting multiple tracks of complex genomic data across multiple genomic windows."

Description from GitHub: "This is a collection of miscellaneous wrappers for pipelining and processing genomic data. In addition there are utilities for quick interactive programming."

Description from GitHub: "Data processing and analysis scripts for our spatial profiling of mouse embryos using seqFISH as described in 'Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis'."

Description from GitHub: "This repository contains all the code and files needed for our scientific data project that highlights comparative and functional study using 395 shotgun metagenomic samples from hematopoietic cell transplant patients collected in the past 10 years in Memorial Hospital. We also demonstrate functional study of those data such as antibiotic resistance genes."

Description from Zenodo: "A Docker image for a slightly-modified version of the xpresspipe software, version 0.6.1. xpresspipe documentation: https://xpresspipe.readthedocs.io/en/latest/content/riboseq.html xpresspipe github: https://github.com/XPRESSyourself/XPRESSpipe" Meant for recreation of XPRESSpipe analysis in Salloum et al.

Description from GitHub: "This repository contains scripts and data files used in the creation of the SPICE dataset. It does not contain the dataset itself. It does contain a collection of QM data for training potential functions."

A code repository to rerun RiboDiff analysis and recreate all plots from Salloum et al. Description from GitHub: "This is the public version of the code for publication. Users can build the docker image from source and run all analyses from the paper."

Description from GitHub: "This repository contains the code to reproduce the modeling figures of the paper by Saiz et al, published in eLife 2020;9:e56079 (doi: 10.7554/eLife.56079) and posted in bioRxiv (preprint 2019.12.27.889006). It includes the following: fig2b.ipynb: self-contained Jupyter notebook to generate the phase portrait shown in Figure 2b. fig2c.ipynb: Jupyter notebook to generate...

Description from GitHub: "This repository contains the data and code associated with the article by Saiz et al., Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development, eLife 2020;9:e56079, DOI:10.7554/eLife/56079. The repository tries to follow a standard structure, mostly based on the Cookiecutter Data Science project and other...