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Results Found: 4
  • Cellular states, clonal dynamics, and evolution in Pearson syndrome revealed via single-cell multi-omics [Celline_scATAC]

    Authors
    Lareau, Caleb A.
    Ludwig, Leif S.
    Description

    Summary from GEO: "Large deletions in mitochondrial DNA (mtDNA) have been linked to a variety of clinical pathologies, including somatic emergence in congenital disorders such as Pearson Syndrome (MIM:557000), a mitochondrial disease characterized by sideroblastic anemia and exocrine pancreas dysfunction. Here, we develop a multi-omics approach to quantify mtDNA deletion heteroplasmy and cell state...

    Subject
    Anemia, Sideroblastic
    Binding sites
    Fibroblasts
    Genomics
    Heteroplasmy/genetics
    Myelodysplastic Syndromes
    Single-Cell Analysis
    Access Rights
    Free to All
  • Transcriptome of mouse leptomeningeal fibroblasts

    Authors
    Remsik, Jan
    Saadeh, Fadi
    Boire, Adrienne
    Description

    Summary from GEO: "Meninges, or the membranous coverings of the brain and spinal cord, play host to dozens of morbid pathologies. In this study we provide a method to isolate the leptomeningeal cell layer, identify leptomeninges in histologic slides, and maintain leptomeningeal fibroblasts in in vitro culture. Using an array of transcriptomic, histological, and cytometric analyses, we identified...

    Subject
    Amino Acid Transport System A
    Fibroblasts
    Intercellular Adhesion Molecule-1
    Meninges
    Transcriptome
    Access Rights
    Free to All
  • MEF to iPSC reprogramming - Serum condition

    Authors
    Weiler, Philipp
    Lange, Marius
    Klein, Michal
    Description

    Description from Figshare: "scRNA-seq time-series dataset of mouse embryonic fibroblast (MEF) reprogramming to induced pluripotent stem cells (iPSCs) subsetted to the serum condition and assayed using 10x Genomics. Contains 39 time points spanning days 0-18 during reprogramming. Total cell number is 165,892. Note that this dataset has already been normalized by total counts and log-transformed....

    Subject
    Fibroblasts
    Genomics
    Mouse Embryonic Stem Cells
    Pluripotent Stem Cells
    RNA-Seq
    Sequence Analysis, RNA
    Single-Cell Analysis
    Access Rights
    Free to All
  • MEF to induced endoderm progenitors reprogramming

    Authors
    Lange, Marius
    Klein, Michal
    Description

    Description from Figshare: "scRNA-seq time-series dataset of mouse embryonic fibroblast (MEF) reprogramming to induced endoderm progenitors (iEPs) assayed using Dropseq and 10x Genomics. Contains 8 time points spanning days 0-28 during reprogramming. Total cell number is 104,887. This dataset contains raw spliced and unspliced counts estimated using the velocyto pipeline (La Manno et al., Nature...

    Subject
    Endoderm
    Fibroblasts
    RNA-Seq
    Single-Cell Gene Expression Analysis
    Access Rights
    Free to All