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MAEA is an E3 ubiquitin ligase promoting autophagy and maintenance of haematopoietic stem cells
- Authors
- Wei, QiaozhiFrenette, Paul S.
- Description
Summary from the GEO: "Haematopoietic stem cells (HSCs) tightly regulate their quiescence, proliferation, and differentiation to generate blood cells during the entire lifetime. The mechanisms by which these critical activities are balanced are still unclear. Here, we report that Macrophage-Erythroblast Attacher (MAEA, also known as EMP), a receptor thus far only identified in erythroblastic island1,...
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Cell Adhesion MoleculesCytoskeletal ProteinsGene Expression ProfilingHematopoiesisHematopoietic Stem CellsLeukemia, Myeloid, AcuteLymphokinesUbiquitin-Protein Ligases
- Access Rights
- Free to All
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Dose-dependent role of the cohesin complex in normal and malignant hematopoiesis [ATAC-Seq]
- Authors
- Ott, Christopher J.Viny, Aaron David
- Description
Summary of the GEO: "Cohesin complex members have recently been identified as putative tumor suppressors in hematologic and epithelial malignancies. The cohesin complex guides chromosome segregation, however cohesin-mutant leukemias do not show genomic instability. We hypothesized reduced cohesin function alters chromatin structure and disrupts cis-regulatory architecture of hematopoietic progenitors....
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fms-Like Tyrosine Kinase 3HematopoiesisLeukemia, Myeloid, AcuteProto-Oncogene Proteins c-kit
- Access Rights
- Free to All
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Dose-dependent role of the cohesin complex in normal and malignant hematopoiesis [RNA-Seq]
- Authors
- Ott, Christopher J.Viny, Aaron David
- Description
Summary from the GEO: "Cohesin complex members have recently been identified as putative tumor suppressors in hematologic and epithelial malignancies. The cohesin complex guides chromosome segregation, however cohesin-mutant leukemias do not show genomic instability. We hypothesized reduced cohesin function alters chromatin structure and disrupts cis-regulatory architecture of hematopoietic progenitors....
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fms-Like Tyrosine Kinase 3HematopoiesisLeukemia, Myeloid, AcuteProto-Oncogene Proteins c-kit
- Access Rights
- Free to All
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Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control [II]
- Authors
- Viny, Aaron DavidLavallée, Vincent-PhillipeLevine, Ross L.
- Description
Summary from GEO: "Transcriptional regulators, including the cohesin complex member STAG2, are recurrently mutated in cancer. The role of STAG2 in gene regulation, hematopoiesis, and tumor suppression remains unresolved. We show Stag2 deletion in hematopoietic stem/progenitor cells (HSPC) results in altered hematopoietic function, increased self-renewal, and impaired differentiation. ChIP-sequencing...
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Binding sitesGene Expression RegulationHematopoiesisHematopoietic Stem CellsRNA-Seq
- Access Rights
- Free to All
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Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control [I]
- Authors
- Viny, Aaron DavidLevine, Ross L.Koche, Richard Patrick
- Description
Summary from GEO: "Transcriptional regulators, including the cohesin complex member STAG2, are recurrently mutated in cancer. The role of STAG2 in gene regulation, hematopoiesis, and tumor suppression remains unresolved. We show Stag2 deletion in hematopoietic stem/progenitor cells (HSPC) results in altered hematopoietic function, increased self-renewal, and impaired differentiation. ChIP-sequencing...
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Binding sitesGene Expression RegulationHematopoiesisHematopoietic Stem CellsRNA-Seq
- Access Rights
- Free to All
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Stag2 regulates hematopoietic differentiation and self-renewal through alterations in gene expression and topological control
- Authors
- Liu, YuDekker, Job
- Description
Summary from GEO: "We performed HiC analyzed on wildtype and Stag2 knock-out hematopoietic progeitor cells and integrated with Stag2 ChIP-seq and RNAseq data to identy genes whose expression and tological structures are regulated by Stag2 during hematopoietic differentiation and self-renewal." Overall design from GEO: "Comparing HiC profiles of two wildtype hematopoietic progenitor cells with...
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Binding sitesChromatin Immunoprecipitation SequencingGene Expression RegulationHematopoiesisHematopoietic Stem CellsRNA-Seq
- Access Rights
- Free to All
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High throughput joint profiling of chromatin accessibility and protein levels in single cells [PBMC stimulation]
- Authors
- Mimitou, Eleni P.Lareau, Caleb A.Chen, Kelvin Y.Ludwig, Leif S.1 more author(s)...
- Description
Summary from GEO: "Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present...
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Cell DifferentiationChromatin Immunoprecipitation SequencingGene Expression ProfilingHematopoiesis
- Access Rights
- Free to All
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High throughput joint profiling of chromatin accessibility and protein levels in single cells [PBMCs]
- Authors
- Mimitou, Eleni P.Lareau, Caleb A.Chen, Kelvin Y.Ludwig, Leif S.1 more author(s)...
- Description
Summary from GEO: "Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present...
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Cell DifferentiationGene Expression ProfilingHematopoiesisLeukocytes, Mononuclear
- Access Rights
- Free to All
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High throughput joint profiling of chromatin accessibility and protein levels in single cells [Tcell KO]
- Authors
- Mimitou, Eleni P.Lareau, Caleb A.Chen, Kelvin Y.Ludwig, Leif S.1 more author(s)...
- Description
Summary from GEO: "Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present...
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Chromatin Immunoprecipitation SequencingGene Expression ProfilingGene Knockout TechniquesHematopoiesisRNA, Guide, CRISPR-Cas SystemsT-Lymphocytes
- Access Rights
- Free to All
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High throughput joint profiling of chromatin accessibility and protein levels in single cells [Tcell_Intra]
- Authors
- Mimitou, Eleni P.Lareau, Caleb A.Chen, Kelvin Y.Ludwig, Leif S.1 more author(s)...
- Description
Summary from GEO: "Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present...
- Subject
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Chromatin Immunoprecipitation SequencingGene Expression ProfilingHematopoiesisRNA, Guide, CRISPR-Cas SystemsT-Lymphocytes
- Access Rights
- Free to All