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Sumstats formatted
- Description
Description from README file: "These sumstats files contains : - only HapMap 3 SNPs (from /groups/price/ldsc/reference_files/w_hm3.snplist) - exclude MHC region (chr6:25Mb-34Mb) - SNPs that are in 1000G (from /groups/price/ldsc/reference_files/1000G_EUR_Phase3/plink_files/1000G.EUR.QC.*bim)" See Description file in FTP server for a more detailed description of the files
- Subject
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Chromatin Immunoprecipitation SequencingGenome-Wide Association StudyMultifactorial Inheritance
- Access Rights
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Free to All
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Kim_ATAC_code
- Authors
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Truong, Buu
- Description
Description from GitHub: "Source codes used for the primary analysis: annotToLD_thinannot.py: make .ldscore.gz from .annot files PartitionHeritability_baseline_others.py: run S-LDSC partition heritability given .annot and .ldscore.gz files (conditioning on the baseline model and other annotation(s)) PartitionHeritability_run.sh: run PartitionHeritability_baseline_others.py across multiple summary...
- Subject
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Chromatin Immunoprecipitation SequencingMultifactorial Inheritance
- Access Rights
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Free to All
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LDSC (LD SCore)
- Authors
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Bulik-Sullivan, BrendanFinucane, Hilary K.Walters, Raymond K.Gazal, Steven8 more author(s)...
- Description
Description from GitHub: "ldsc is a command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores."
- Subject
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Genetic Association StudiesGenome-Wide Association StudyMultifactorial Inheritance
- Access Rights
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Free to All