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  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation [ChIP-Seq]

    Authors
    Kidder, Benjamin L.
    Zhao, Keji
    Description

    Summary from the GEO:"Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive histone modifications such as trimethylated histone lysine 20 (H4K20me3) in pluripotency and development are largely unknown. Here, we show that the histone lysine methyltransferase SMYD5 mediates H4K20me3 at heterochromatin...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation [RNA-Seq]

    Authors
    Kidder, Benjamin L.
    Zhao, Keji
    Description

    Summary from the GEO: "Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive histone modifications such as trimethylated histone lysine 20 (H4K20me3) in pluripotency and development are largely unknown. Here, we show that the histone lysine methyltransferase SMYD5 mediates H4K20me3 at heterochromatin...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation

    Authors
    Kidder, Benjamin L.
    Description

    Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Summary: This SuperSeries is composed of the SubSeries GSE94033 and GSE94085. Article summary that correlates to the GEO: "Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • Regulatory logic of endogenous RNAi in silencing de novo genomic conflicts

    Authors
    Vedanayagam, Jeffrey
    Lin, Ching-Jung
    Papareddy, Ranjith
    Nodine, Michael
    3 more author(s)...
    Description

    Summary from GEO: "Although the biological utilities of endogenous RNAi (endo-RNAi) have been largely elusive, recent studies reveal its critical role in the non-model fruitfly Drosophila simulans to suppress selfish genes, whose unchecked activities can severely impair spermatogenesis. In particular, hairpin RNA (hpRNA) loci generate endo-siRNAs that suppress evolutionary novel, X-linked, meiotic...

    Subject
    Gene Expression
    RNA Interference
    RNA-Seq
    RNA, Small Interfering
    Spermatogenesis
    Access Rights
    Free to All
  • Supplemental table S1 from Histone Acetyltransferase Activity of MOF Is Required for MLL-AF9 Leukemogenesis

    Authors
    Valerio, Daria G.
    Xu, Haiming
    Chen, Chun-Wei
    Hoshii, Takayuki
    11 more author(s)...
    Description

    Description from Figshare: "RNAi screen data summary"

    Subject
    Histone Acetyltransferases
    Leukemia
    RNA Interference
    Access Rights
    Free to All
  • A nuclear RNA export factor variant licenses piRNA-guided heterochromatin formation

    Authors
    Imre, Richard
    Brennecke, Julius Fabian
    Description

    Description from PRIDE: "Small RNA silencing pathways protect genome integrity in part through establishing heterochromatin at transposon loci. In animals, this process requires piRNA-guided targeting of nuclear PIWI proteins to nascent transcripts. The molecular events contributing to heterochromatin formation upon PIWI binding to nascent RNA, a transient molecule at chromatin, are unknown. Here,...

    Subject
    Binding sites
    Heterochromatin
    Protein Conformation
    RNA Interference
    RNA-Binding Proteins
    RNA, Small Interfering
    Access Rights
    Free to All
  • The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation

    Authors
    Batki, Julia
    Schnabl, Jakob
    Wang, Juncheng
    Handler, Dominik
    9 more author(s)...
    Description

    Summary from GEO: "The PIWI-interacting RNA (piRNA) pathway protects animal genome integrity in part through establishing repressive heterochromatin at transposon loci. Silencing requires piRNA- guided targeting of nuclear PIWI proteins to nascent transposon transcripts, yet the subsequent molecular events are not understood. Here, we identify SFiNX (Silencing Factor interacting Nuclear eXport variant),...

    Subject
    Genomics
    Heterochromatin
    RNA Interference
    RNA-Binding Proteins
    RNA-Seq
    Access Rights
    Free to All