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Genome-wide analysis of chromatin accessibility in developing thymic Treg cells
- Authors
- Dikiy, StanislavFeng, YongqiangZhong, YiRudensky, Alexander Y.
- Description
Summary from the GEO: "We analyzed open chromatin regions in thymic Treg cells, their immediate precursors (CD25+ Foxp3-), and mature and semi-mature CD4 single positive cells. We wished to understand which chromatin regions become accessible in response to TCR-stimulation and then Foxp3 expression as Treg cells develop. Examination of chromatin accessibility in developing CD4SP thymocyte subsets,...
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T-Lymphocytes, RegulatoryThymocytesThymus GlandThymus Neoplasms
- Access Rights
- Free to All
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Targeting Treg cells with GITR activation alleviates resistance to immunotherapy in murine glioblastomas
- Authors
- Amoozgar, ZohrehKloepper, JonasRen, JunTay, Rong E.18 more author(s)...
- Description
Summary from the GEO: "Immune checkpoint blockers (ICBs) have failed in all phase III glioblastoma (GBM) trials. Here, we show that regulatory T (Treg) cells play a key role in GBM resistance to ICBs in experimental gliomas. Targeting glucocorticoid-induced TNFR-related receptor (GITR) in Treg cells using an agonistic antibody (αGITR) promotes CD4 Treg cell differentiation into CD4 effector T cells,...
- Subject
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GlioblastomaImmune Checkpoint InhibitorsT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Profiling murine gut influence on peripheral tolerance
- Description
Summary from the ENA: "Antibiotic exposure early in life, and other practices impacting the vertical transmission and ordered assembly of a diverse and balanced gut microbiota, are associated with a higher risk of immunological and metabolic disorders such as asthma and allergy, autoimmunity, obesity, and susceptibility to opportunistic infections. Here, we use a model of perinatal exposure to the...
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CD4-Positive T-LymphocytesDysbiosisForkhead Transcription FactorsMicrobiotaT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Foxp3-dependent and -independent functions of peripherally-induced Treg cells [08075]
- Authors
- van der Veeken, JorisCampbell, Clarissa M.Pritykin, YurySchizas, Michail8 more author(s)...
- Description
Summary from GEO: "Regulatory T (Treg) cells expressing the lineage-defining transcription factor Foxp3 are essential for the maintenance of immune tolerance. Foxp3 expression can be induced in a subset of developing self-reactive thymocytes to yield thymic Treg (tTreg) cells, critical for tolerance against self-antigens. Alternatively, activation of mature naïve T cells under non-inflammatory conditions...
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Forkhead Transcription FactorsImmune ToleranceT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Foxp3-dependent and -independent functions of peripherally-induced Treg cells [09748]
- Authors
- van der Veeken, JorisCampbell, Clarissa M.Pritykin, YurySchizas, Michail8 more author(s)...
- Description
Summary from GEO: "Regulatory T (Treg) cells expressing the lineage-defining transcription factor Foxp3 are essential for the maintenance of immune tolerance. Foxp3 expression can be induced in a subset of developing self-reactive thymocytes to yield thymic Treg (tTreg) cells, critical for tolerance against self-antigens. Alternatively, activation of mature naïve T cells under non-inflammatory conditions...
- Subject
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Forkhead Transcription FactorsImmune ToleranceT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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scRNA-seq to study features of CD4conv and Treg cells in spleen and bone marrow of mice
- Authors
- Elias, SchlomoSchizas, MichailRudensky, Alexander Y.
- Description
Summary from GEO: "The aim of the study was to compare gene expression between Treg cells in the bone marrow and the spleen." Overall design from GEO: "2 male Foxp3-DTR-GFP were used for the study. Single cells suspension from BM and spleen were prepared, then enriched for CD4 by magneic beads and sorted by gating on CD4+TCRb+. GFP was used to differentiate between Tregs and CD4conv. CD4conv...
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Bone MarrowCD4-Positive T-LymphocytesSequence Analysis, RNASpleenT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Immune profiling after allogeneic hematopoietic cell transplantation in pediatric acute myeloid leukemia
- Authors
- Shahid, SanamCeglia, NicholasLe Luduec, Jean-BenoîtMcPherson, Andrew8 more author(s)...
- Description
Summary from GEO: "Although allogeneic hematopoietic cell transplantation (allo-HCT) is curative for high-risk pediatric acute myeloid leukemia (AML), disease relapse remains the primary cause of post-transplant mortality. To identify pressures imposed by allo-HCT on AML cells that escape the graft-versus-leukemia effect, we evaluated immune signatures in bone marrow samples from four pediatric patients...
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Graft vs Leukemia EffectHematopoietic Stem Cell TransplantationLeukemia, Myeloid, AcuteSingle-Cell Gene Expression AnalysisT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Next Generation Sequencing Analysis of OX40hi Treg and OX40lo Treg cells from mouse tumors and spleens
- Authors
- Tan, AdrianYang, NingDeng, Liang
- Description
Summary from GEO: "Based on RNA-seq technology, we studies gene expression profiles in Treg cells isolated from mouse tumors and spleens. We identified differential gene expressions comparing OX40hi Treg with OX40lo Treg cells from tumors and spleens. The difference of Trges in tumors and spleens were also identified." Overall design from GEO: "Foxp3-GFP mice were intradermally implanted with...
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OX40 LigandRNA-Binding ProteinsSpleenT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Novel Foxo1-dependent Transcriptional Programs Control Treg Cell Function [Affymetrix gene expression data]
- Authors
- Ouyang, WeimingLiao, WillLuo, Chong T.Yin, Na12 more author(s)...
- Description
Summary from GEO: "Regulatory T (Treg) cells characterized by expression of the transcription factor forkhead box P3 (Foxp3) maintain immune homeostasis by suppressing self-destructive immune responses1-4. Foxp3 operates as a late acting differentiation factor controlling Treg cell homeostasis and function5, whereas the early Treg cell lineage commitment is regulated by the Akt kinase and the forkhead...
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Binding sitesForkhead Transcription FactorsGene DeletionGene ExpressionT-Lymphocytes, Regulatory
- Access Rights
- Free to All
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Foxp3 exploits a preexistent enhancer landscape for regulatory T cell lineage specification [ChIP-Seq]
- Authors
- Samstein, Robert M.Arvey, AaronRudensky, Alexander Y.
- Description
Summary from GEO: "Regulatory T (Treg) cells, whose identity and function are defined by the transcription factor Foxp3, are indispensable for immune homeostasis. It is unclear whether Foxp3 exerts its Treg lineage specification function through active modification of the chromatin landscape and establishment of new enhancers or by exploiting a pre-existing enhancer landscape. Analysis of the chromatin...
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Chromatin Immunoprecipitation SequencingForkhead Transcription FactorsHomeostasis/immunologyT-Lymphocytes, Regulatory
- Access Rights
- Free to All