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Results Found: 17
  • Chromatin Landscape Analysis of primary mouse prostate organoid culture with overexpression of FOXA1

    Authors
    Adams, Elizabeth
    Sawyers, Charles L.
    Leslie, Christina
    Description

    Summary from the GEO: "Chromatin Landscape Analysis of primary mouse prostate organoid culture with overexpression of FOXA1. Examination by genotypes and days elapsed prepared in 3 replicates." This dataset depicts mutations in the FOXA1 gene, which define a unique subset of prostate cancers.

    Subject
    Chromatin
    Mutation
    Prostatic Neoplasms
    Access Rights
    Free to All
  • Gene expression analysis of primary mouse prostate organoid culture with overexpression of FOXA1

    Authors
    Adams, Elizabeth
    Sawyers, Charles L.
    Leslie, Christina
    Description

    Summary from the GEO: "Gene expression analysis of primary mouse prostate organoid culture with overexpression of FOXA1 Examination by genotypes and days elapsed prepared in 3 replicates." The study associated with the dataset further explains FOXA1 and how it connects to the dataset: "Mutations in the transcription factor FOXA1 define a unique subset of prostate cancers but the functional consequences...

    Subject
    Chromatin
    Mutation
    Prostatic Neoplasms
    Access Rights
    Free to All
  • Genomic analyses of primary mouse prostate organoid culture with overexpression of FOXA1

    Authors
    Adams, Elizabeth
    Sawyers, Charles L.
    Leslie, Christina
    Description

    Summary from the GEO: "Mutations in the FOXA1 transcription factor define a unique subset of prostate cancers but the functional consequences of these mutations and whether they confer gain or loss of function is unknown. By annotating the FOXA1 mutation landscape from 3086 human prostate cancers, we define two hotspots in the forkhead domain: Wing2 (~50% of all mutations) and R219 (~5%), a highly...

    Subject
    Chromatin
    Mutation
    Prostatic Neoplasms
    Access Rights
    Free to All
  • Inhibition of MYC by the SMARCB1 tumor suppressor

    Authors
    Tansey, William
    Weissmiller, April
    Liu, Qi
    Wang, Jing
    Description

    Summary from the GEO: "We report that the protein encoded by the SMARCB1 gene, SNF5, is capable of inhibiting MYC binding in vitro and in a malignant rhabdoid tumor (MRT) cell line. By comparing the effects of reintroduction of SNF5 with genetic inhibition of MYC (OMOMYC) on multiple aspects of chromatin remodeling and transcription in MRT cells, we show that regulation of MYC binding by SNF5 is not...

    Subject
    Chromatin
    Chromatin Assembly and Disassembly
    Proto-Oncogene Proteins c-myc
    Rhabdoid Tumor
    SMARCB1 Protein
    Access Rights
    Free to All
  • DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. (Hammond et al. 2021)

    Authors
    Hammond, Colin M.
    Bao, Hongyu
    Huang, Hongda
    Groth, Anja
    Description

    Raw data for Western blots, gel-based assays and ITC as a pdf. These images are correlated with the experiments and descriptions of the associated publication. Overall, research for the publication demonstrated that "DNAJC9 integrates ATP-resourced protein folding into the histone supply pathway to resolve aberrant intermediates throughout the dynamic lives of histones."

    Subject
    Chromatin
    Histone Chaperones
    Histones
    HSP40 Heat-Shock Proteins
    Access Rights
    Free to All
  • Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [ChIP-seq]

    Authors
    Sun, Zhen
    Helin, Kristian
    Description

    Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...

    Subject
    Chromatin
    Chromatin Immunoprecipitation Sequencing
    Histone-Lysine N-Methyltransferase
    Nuclear Proteins
    Sotos Syndrome
    Access Rights
    Free to All
  • Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [SLAM-seq]

    Authors
    Sun, Zhen
    Helin, Kristian
    Description

    Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...

    Subject
    Chromatin
    Histone-Lysine N-Methyltransferase
    Nuclear Proteins
    Sequence Analysis, RNA
    Sotos Syndrome
    Access Rights
    Free to All
  • Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [CUT&RUN]

    Authors
    Sun, Zhen
    Helin, Kristian
    Description

    Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including a spectrum of cancers and the genetic disorder Sotos syndrome. Despite its function in modulating the chromatin landscape, a direct role of NSD1 in transcriptional regulation remains largely...

    Subject
    Chromatin
    Histone-Lysine N-Methyltransferase
    Nuclear Proteins
    Sotos Syndrome
    Access Rights
    Free to All
  • Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [RNA-seq]

    Authors
    Sun, Zhen
    Helin, Kristian
    Description

    Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including Sotos syndrome. Despite impacts of H3K36me2 on H3K27me3 and DNA methylation, a direct role of NSD1 in transcriptional regulation remains largely unknown. Here, we show that NSD1 and H3K36me2...

    Subject
    Chromatin
    Histone-Lysine N-Methyltransferase
    Nuclear Proteins
    RNA-Seq
    Sotos Syndrome
    Access Rights
    Free to All
  • Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1 [ATAC-seq]

    Authors
    Sun, Zhen
    Helin, Kristian
    Description

    Summary from GEO: "Nuclear-receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes H3K36me2, is essential for mammalian development and frequently dysregulated in diseases, including Sotos syndrome. Despite impacts of H3K36me2 on H3K27me3 and DNA methylation, a direct role of NSD1 in transcriptional regulation remains largely unknown. Here, we show that NSD1 and H3K36me2...

    Subject
    Chromatin
    Chromatin Immunoprecipitation Sequencing
    Histone-Lysine N-Methyltransferase
    Nuclear Proteins
    Sotos Syndrome
    Access Rights
    Free to All