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Deconvoluting global cytokine signaling networks in natural killer cells [ChIP-Seq]
- Authors
- Lau, Colleen M.Sun, Joseph C.
- Description
Summary from the GEO: "Cytokine signaling via signal transducer and activator of transcription (STAT) proteins is crucial for optimal antiviral responses of natural killer (NK) cells. However, the pleiotropic effects of both cytokine and STAT signaling preclude the ability to precisely attribute molecular changes to either source. In this study, we employ a multi-“omics” approach to deconstruct and...
- Subject
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CytokinesEpigenesis, GeneticKiller Cells, NaturalSignal TransductionSTAT Transcription FactorsSTAT4 Transcription FactorSTAT5 Transcription Factor
- Access Rights
- Free to All
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Deconvoluting global cytokine signaling networks in natural killer cells [RNA-Seq]
- Authors
- Lau, Colleen M.Sun, Joseph C.
- Description
Summary from the GEO: "Cytokine signaling via signal transducer and activator of transcription (STAT) proteins is crucial for optimal antiviral responses of natural killer (NK) cells. However, the pleiotropic effects of both cytokine and STAT signaling preclude the ability to precisely attribute molecular changes to either source. In this study, we employ a multi-“omics” approach to deconstruct and...
- Subject
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CytokinesEpigenesis, GeneticKiller Cells, NaturalSignal TransductionSTAT Transcription FactorsSTAT4 Transcription FactorSTAT5 Transcription Factor
- Access Rights
- Free to all with registration
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Deconvoluting global cytokine signaling networks in natural killer cells [ATAC-Seq]
- Authors
- Lau, Colleen M.Sun, Joseph C.
- Description
Summary from the GEO: "Cytokine signaling via signal transducer and activator of transcription (STAT) proteins is crucial for optimal antiviral responses of natural killer (NK) cells. However, the pleiotropic effects of both cytokine and STAT signaling preclude the ability to precisely attribute molecular changes to either source. In this study, we employ a multi-“omics” approach to deconstruct and...
- Subject
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CytokinesEpigenesis, GeneticKiller Cells, NaturalSignal TransductionSTAT Transcription FactorsSTAT4 Transcription FactorSTAT5 Transcription Factor
- Access Rights
- Free to All
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Divergent role for STAT5 in the adaptive responses of natural killer cells
- Authors
- Lau, Colleen M.Sun, Joseph C.
- Description
Summary from the GEO: "Natural killer (NK) cells are innate lymphocytes with the capacity to elicit adaptive features, including clonal expansion and immunological memory. Because signal transducer and activator of transcription 5 (STAT5) is essential for NK cell development, the role of this transcription factor and its upstream cytokines IL-2 and IL-15 during infection have not been carefully investigated....
- Subject
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CytokinesImmunologic MemoryInterleukin-15Interleukin-2Killer Cells, NaturalSTAT5 Transcription Factor
- Access Rights
- Free to All
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Deconvoluting global cytokine signaling networks in natural killer cells
- Authors
- Lau, Colleen M.
- Description
This super series contains has three subseries with containing datasets of RNA, ATAC and ChIP sequencing. The overall experiment was designed to deconstruct and and rebuild the interaction of major STAT (signal transducer and activator of transcription) signaling pathways in NK cells. The experiment develops some understanding of cytokine signaling pathways as a resource for improving cellular immunotherapy.
- Subject
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CytokinesEpigenesis, GeneticSignal TransductionSTAT Transcription Factors
- Access Rights
- Free to All
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Control of nutrient uptake by IRF4 orchestrates innate immune memory - scRNA-seq
- Authors
- Santosa, Endi KSun, Joseph C.
- Description
Summary from GEO: "Natural Killer (NK) cells are innate cytotoxic lymphocytes with adaptive immune features, including antigen-specificity, clonal expansion, and memory. As such, NK cells share many transcriptional and epigenetic programs with their adaptive CD8+ T cell siblings. Various signals ranging from antigen, co-stimulation, and proinflammatory cytokines are required for optimal NK cell responses...
- Subject
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CD8-Positive T-LymphocytesChromatin Immunoprecipitation SequencingCytokinesInterferon Regulatory FactorsKiller Cells, NaturalRNA-Seq
- Access Rights
- Free to All
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Control of nutrient uptake by IRF4 orchestrates innate immune memory - ChIP-seq
- Authors
- Santosa, Endi KSun, Joseph C.
- Description
Summary from GEO: "Natural Killer (NK) cells are innate cytotoxic lymphocytes with adaptive immune features, including antigen-specificity, clonal expansion, and memory. As such, NK cells share many transcriptional and epigenetic programs with their adaptive CD8+ T cell siblings. Various signals ranging from antigen, co-stimulation, and proinflammatory cytokines are required for optimal NK cell responses...
- Subject
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CD8-Positive T-LymphocytesChromatin Immunoprecipitation SequencingCytokinesInterferon Regulatory FactorsKiller Cells, Natural
- Access Rights
- Free to All
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Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
- Description
Description from Synapse.org "Rheumatoid arthritis (RA) is a prototypical autoimmune disease that causes inflammation leading to cartilage and bone destruction in joints. Clinical challenges in RA include the empirical selection of drugs to treat patients, inadequate responders with incomplete disease remission, and lack of a cure. We profiled the full spectrum of cells in inflamed synovium from...
- Subject
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Arthritis, RheumatoidCytokinesInflammationRNA-SeqSingle-Cell Analysis
- Access Rights
- Free to All