Summary from GEO: "We validated patient's tumor-derived cell lines of liposarcoma by analysing copy number alterations using aCGH or WGS and comparing with the original tumor tissues." Overall design from GEO: "Examination of copy number alterations for 2 cell lines, one of the original tumor, one PDX-tumor and its original tumor."

Summary from GEO: "We validated patient's tumor-derived cell lines of liposarcoma by analysing copy number alterations using aCGH or WGS and comparing with the original tumor tissues." Overall design from GEO: "Examination of copy number alterations for 2 cell lines, one of the original tumor, one PDX-tumor and its original tumor."

Description from Figshare: "Table S6. Copy number alterations (CNAs) in cancer genes identified by whole exome sequencing (WES) and/or initial panel sequencing. Each sheet is a different tumor sample."

Description from Figshare: "Mutations and copy number alterations in PDX models used in this study"

Description from Figshare: "Supplementary Table 4: Complete list of mutations and copy number alterations detected by MSK-IMPACT in 45 LCNECs"

The Multiple Myeloma Research Foundation (MMRF) runs a multi-site longitudinal clinical registry study of patients newly diagnosed with MM. This project is called CoMMpass, and collects both clinical and genomic information periodically. Researchers used interim analysis 19 (IA19) for their conclusions in "Gene interaction network analysis in multiple myeloma detects complex immune dysregulation...

Code associated with the manuscript for "Gene interaction network analysis in multiple myeloma detects complex immune dysregulation associated with shorter survival." Includes data and instructions, R scripts, lab notebooks, and high resolution images.

Description from GitHub: "JaBbA builds a genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments). It can be used for discovering various patterns of structural variations. If you use JaBbA in your work, please cite: Distinct Classes of Complex Structural Variation Uncovered across...