Description from GitHub: "Data processing and analysis scripts for our spatial profiling of mouse embryos using seqFISH as described in 'Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis'."

Description from GitHub: "CellRank is a modular framework to study cellular dynamics based on Markov state modeling of multi-view single-cell data. See our documentation, and the CellRank 1 and CellRank 2 manuscript to learn more. See here for how to properly cite our work. CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and easy to use. In the backend, it...

Description from Figshare: "scRNA-seq dataset of murine intestinal organoids metabolically labeled and sequenced with scEU-seq. The data has been preprocessed (filtered, normalized, PCA, neighbors, UMAP). See here for details." DOI corresponds to the Figshare data collection to which this dataset belongs

Description from GitHub: "This is the repository associated with the article by Morgani et al., A Sprouty4 reporter to monitor FGF/ERK signaling activity in ESC and mice published in Developmental Biology 441:1 pp104:126 (2018) doi.org/10.1016/j.ydbio.2018.06.017 This repository contains the corrected data tables for all preimplantation embryos analyzed in the study, the R scripts used to clean,...

Description from GitHub: "This repository contains R scripts to reproduce the five figures in Chi et al., "High resolution analyses of associations between medications, microbiome and mortality in cancer patients". R folder contains the key script for PARADIGM algorithm. RMD folder contains the scripts to produce Figures 1-5 in the paper."

Description from GitHub: "This repository contains all the code and files needed for our scientific data project that highlights comparative and functional study using 395 shotgun metagenomic samples from hematopoietic cell transplant patients collected in the past 10 years in Memorial Hospital. We also demonstrate functional study of those data such as antibiotic resistance genes."

Description from GitHub: "This repsitory contains the code to reproduce results shown in CellRank 2: unified fate mapping in multiview single-cell data and has been rendered as a Jupyter book here. All datasets are freely available via CellRank's API or figshare."

Description from GitHub: "This repository contains the data extracted from all embryo images in the study, the R scripts used to clean, transform and analyze the data and the code to generate all plots in the article. All original microscopy images and raw image segmentation files can be found in Figshare"

Description from GitHub: "This directory contains the five equivariant transformer models described in the paper Peter Eastman, Pavan Kumar Behara, David L. Dotson, Raimondas Galvelis, John E. Herr, Josh T. Horton, Yuezhi Mao, John D. Chodera, Benjamin P. Pritchard, Yuanqing Wang, Gianni De Fabritiis, and Thomas E. Markland. "SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine...

Description from GitHub: "This repository contains scripts and data files used in the creation of the SPICE dataset. It does not contain the dataset itself. It does contain a collection of QM data for training potential functions."