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Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 442 samples of skin cutaneous melanomas from 488 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information...
- Subject
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DNA Mutational AnalysisMelanomaSkin Neoplasms
- Access Rights
- Free to All
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SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...
- Subject
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Breast NeoplasmsCarcinoma, HepatocellularCarcinoma, Non-Small-Cell LungCarcinoma, Renal CellColorectal NeoplasmsDNA Mutational AnalysisEndometrial NeoplasmsEsophageal NeoplasmsGenes, erbBGenes, erbB-2MelanomaOvarian NeoplasmsPancreatic NeoplasmsSalivary Gland NeoplasmsSarcomaSkin NeoplasmsUrinary Bladder NeoplasmsUterine Cervical Neoplasms
- Access Rights
- Free to All
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Breast Invasive Carcinoma (TCGA, Firehose Legacy)
- Description
TCGA Breast Invasive Carcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 1,108 carcinomas from 1,101 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...
- Subject
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Breast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, LobularDNA Mutational AnalysisSkin Neoplasms
- Access Rights
- Free to All
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Skin Cutaneous Melanoma (TCGA, Firehose Legacy)
- Description
TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 480 carcinomas from 471 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...
- Subject
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DNA Mutational AnalysisMelanomaSkin Neoplasms
- Access Rights
- Free to All
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The Angiosarcoma Project - Count Me In (Nature Medicine, 2020)
- Description
Dataset Summary Description: "The Angiosarcoma Project is an ongoing patient-driven initiative. This archived Angiosarcoma Project dataset was analyzed in the linked Nature Medicine 2020 manuscript, and is derived from 48 samples from 36 angiosarcoma patients. Angiosarcoma tumor specimens (FFPE) were subjected to whole-exome sequencing (along with matched germline whole-exome sequencing). In addition...
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AdenocarcinomaBasal Cell CarcinomaBreast NeoplasmsHemangiosarcomaHodgkin DiseaseLeukemia, Lymphocytic, Chronic, B-CellRectal NeoplasmsSkin NeoplasmsThyroid NeoplasmsUterine NeoplasmsVulvar Neoplasms
- Access Rights
- Free to All
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The Angiosarcoma Project (Provisional): an ongoing patient-driven initiative.
- Description
Dataset Summary Description: "This provisional dataset is currently derived from 83 samples, including tumor specimens (FFPE and cfDNA) from 62 angiosarcoma patients subjected to WES (along with matched germline WES). This study includes genomic data, patient-reported data (pre-pended as PRD), medical record data (MedR), and pathology report data (PATH). As these data were generated in a research...
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Basal Cell CarcinomaBreast NeoplasmsColorectal NeoplasmsHemangiosarcomaHodgkin DiseaseLeukemia, Lymphocytic, Chronic, B-CellProstatic NeoplasmsRectal NeoplasmsSkin NeoplasmsThyroid NeoplasmsUterine NeoplasmsVulvar Neoplasms
- Access Rights
- Free to All
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Melanoma (MSKCC, 2018): MSK-IMPACT sequencing of 720 Melanoma tumor samples with matched normals.
- Description
This dataset contains the summary data visualizations and clinical data of 696 samples of MSK-IMPACT sequencing of Melanoma tumors with matched normals from 696 patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Primary/Metastasis Sample Type, Demographic Information, AJCC 7th & AJCC 8th Staging, Bone Status, CNS Status, DMT Primary Site, Driver Class, ECOG, LDH,...
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MelanomaSkin Neoplasms
- Access Rights
- Free to All
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Desmoplastic Melanoma (Broad Institute, Nat Genet 2015): Exome/Whole Genome sequencing of 20 desmoplastic melanoma tumor/normal pairs
- Description
This dataset contains the summary data visualizations and clinical data of Exome/Whole Genome sequencing of 20 desmoplastic melanoma tumor/normal pairs. Clinical data includes: Mutation Count, Diagnosis Age, Anatomic Region, Detailed Sample Histology Category, Platform, Secondary Platform, Total Mutations, and Tumor Other Histologic Subtype. The plaintext components of the dataset can be downloaded...
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MelanomaSkin Neoplasms
- Access Rights
- Free to All
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Desmoplastic Melanoma
- Authors
- Shain, Alan H.Bastian, Boris C.
- Description
Summary from the GEO: " High resolution aCGH was performed on 10 primary Desmoplastic Melanomas (DMs). DMs are a rare subtype of melanoma known for their pronounced desmoplastic stroma and spindled melanocytes. 10 samples were hybridized to Agilent 1 Million feature two color arrays as compared to a panel of normal male DNA. 6 samples were hybridized to Agilent 244K feature two color arrays as compared...
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MelanomaSkin Neoplasms
- Access Rights
- Free to All
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Whole genome sequencing of primary and metastatic Melanoma cases in an Australian cohort
- Description
Study Description from EGA: "Melanoma is the fourth most common cancer in Australia and the leading cause of cancer death in young adults. The Australian Melanoma Genome Project (AMGP) is analysing whole genomes from melanomas. We include the results of whole genome sequencing (WGS) for a number of datasets that include cutaneous, acral and mucosal melanoma subtypes. "
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Conjunctival NeoplasmsMelanomaNevus, PigmentedSkin NeoplasmsUveal Neoplasms
- Access Rights
- Application Required